MToolBox-variant-annotation

This wrapper performs functional annotation of variants reported in the VCF file (the output of the MToolBox-variant-calling workflow) with mtoolnote. If the VCF file is not present, the wrapper will first run the MToolBox-variant-calling workflow to produce it. The final output is an annotated VCF file.

Note

If you already have a VCF of mt variants, you might consider to annotate it by directly running mtoolnote.

The setup of this workflow is detailed in the setup of the MToolBox-variant-calling workflow.